Rin überlebte nur knapp, als sie von einem Triebwerk zu Tode gemulcht wurde, doch während sich ihr Körper langsam regenerierte, verschwanden ihre Erinnerungen. Jetzt muss sie ihre Vergangenheit herausfinden, bevor Apos und seine Engel ihr die Zukunft stehlen.
Thirty years after episode four, the borders between 1.0 and 2.0 have been erased completely and it is now possible to "download" things into the real world. Rin took 25 years to regenerate her body and suffered retrograde amnesia in process. Teruki became a successful businessman and Mimi, a Buddhist nun. Meanwhile, Eipos disguised Laura as Rin and made her hunt immortals for their time spores. The episode begins with Teruki's daughter Mishio discovering his records of Rin and by chance, meeting her amnesiac self. Rin is working for James & Will company, whose CEO is an immortal and is soon killed by Laura. Mishio finds her body, and thinking that Rin killed her, starts following her around. She witnesses a man named Ihiko propose to Rin, which she refuses, telling him of her amnesia. After Mishio asks Teruki about Rin, he finds her but decides that it's better for her painful memories not to return and doesn't contact her. He then finds Mimi who tells him that Rin is apparently hunting immortals. Meanwhile, Rin accepts Ihiko's new proposal and the two make love, when Laura attacks and kills them both. This returns Rin's memories and she escapes with Mishio to Teruki's estate. After a conversation with him, Rin and Mishio take a train to Kyoto, where Mimi's temple is located. Meanwhile, Mimi invites three other immortals, anticipating Laura's attack, but Laura brings angels with her who proceed to devour them. Rin arrives and defeats Laura and the angels, only to witness Mimi raped by Eipos. Eipos is then revealed to be an hermaphrodite god and removes Rin's time spore, presumably killing her.
2055年。燐が消え去り長い時が過ぎた。前埜美汐はアクセサリーを物色中に、父親・輝紀の古い記録メディアを発見する。若かりし頃の輝紀の画像や燐の画像をいたずら半分に見ていた美汐は、その後のパーティーで燐そっくりの女性を発見する。その後、帰宅途中に女性の死体と、頬に血をつけた燐とばったり出くわした。
思わず悲鳴を上げる美汐だったが、後から来た警官に死体が無いことを指摘される。
不可解な現象に困惑する美汐であったが、自ら燐という人間を調査することに･･･。ユグドラシルを巡る混乱が世界を浸食する！？
Рин едва выжила после того, как ее насмерть сбил реактивный двигатель, но пока ее тело медленно восстанавливалось, ее воспоминания исчезли. Теперь она должна выяснить свое прошлое, пока Апос и его ангелы не украли ее будущее.
Kyoto, 2055. Muchas cosas han cambiado, Rin hace años que desapareció sin dejar rastro, Mimi se ha convertido en monja y Teruki Maeno es un maduro hombre de negocios que vive en una confortable mansión y tiene una hija inquieta admiradora de Sherlock Holmes, Mishio. Un día, después de haber visto un vídeo de Rin entre las cosas de su padre, la chica cree reconocerla en una fiesta y decide seguirla. Los problemas no han hecho más que comenzar.
