The Net Navi, Pharaohman, is plotting his reign of terror on the world. Having been locked away for many years, he is now free to rule! He transforms the science labs network into a vast desert, and resides within a cyber pyramid. Meanwhile, Netto is having trouble coming to terms with the loss of Rockman... until, one day, strange gold symbols appear on his (and his friends') PETs. Everyone thinks that it may be Rockman's data! Enzan meets with Netto and explains to him that he promises to repay him for what Rockman did to save Blues. Pharaohman begins a plague against the world when locusts attack an airport, and Yuuichirou comes home to offer a helping hand to Rockman's revival.
English version title - PharaohMan Reborn!
消えてしまったロックマンを思い悲しむ熱斗。熱斗を気遣うメイルやデカオたちは、なんとかロックマンが蘇る方法はないかと模索する。一方ワイリーはファラオマンこそ究極プログラムを持つナビだと確信し、ストーンマンとボンバーマンを量産して、ファラオマンの捕獲に乗り出す。そして暴走するファラオマンは科学省を占拠し、ネットを通じて世界各地に異変を起こしていた・・・。
